PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05923g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 195aa MW: 21421.7 Da PI: 8.039

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05923g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	16	76	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds ntkfCyynny+lsqPr+fCk+C+ryWtkGG+lrn+PvGg++rkn k+s Niben101Scf05923g00003.1 16 EQEILKCPRCDSINTKFCYYNNYNLSQPRHFCKNCKRYWTKGGTLRNIPVGGASRKNTKRS 76 57899****************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-24	13	68	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-33	18	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.807	20	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	22	58	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MQDSSVYSEI KLQFPEQEIL KCPRCDSINT KFCYYNNYNL SQPRHFCKNC KRYWTKGGTL 60 RNIPVGGASR KNTKRSSSSN SKRSSTTSYL SSSSPAQPKS EPFPIPNVAV FDQNSRIHGP 120 FSSLFTSNGP EIGNLFEALK PNVSDSGLIS GSDAAAQNTD EDLCPIQISE DSNCWNGGHG 180 WTDLAIFSAP GSSFQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016453403.1	1e-102	PREDICTED: dof zinc finger protein DOF3.1-like
TrEMBL	A0A0V0HDG7	4e-78	A0A0V0HDG7_SOLCH; Putative dof zinc finger protein DOF3.1-like
STRING	Solyc06g062520.1.1	1e-68	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-34	DOF zinc finger protein 1