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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05923g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 195aa MW: 21421.7 Da PI: 8.039 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.7 | 1.4e-39 | 16 | 76 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds ntkfCyynny+lsqPr+fCk+C+ryWtkGG+lrn+PvGg++rkn k+s Niben101Scf05923g00003.1 16 EQEILKCPRCDSINTKFCYYNNYNLSQPRHFCKNCKRYWTKGGTLRNIPVGGASRKNTKRS 76 57899****************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-24 | 13 | 68 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.0E-33 | 18 | 74 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.807 | 20 | 74 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 22 | 58 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MQDSSVYSEI KLQFPEQEIL KCPRCDSINT KFCYYNNYNL SQPRHFCKNC KRYWTKGGTL 60 RNIPVGGASR KNTKRSSSSN SKRSSTTSYL SSSSPAQPKS EPFPIPNVAV FDQNSRIHGP 120 FSSLFTSNGP EIGNLFEALK PNVSDSGLIS GSDAAAQNTD EDLCPIQISE DSNCWNGGHG 180 WTDLAIFSAP GSSFQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016453403.1 | 1e-102 | PREDICTED: dof zinc finger protein DOF3.1-like | ||||
TrEMBL | A0A0V0HDG7 | 4e-78 | A0A0V0HDG7_SOLCH; Putative dof zinc finger protein DOF3.1-like | ||||
STRING | Solyc06g062520.1.1 | 1e-68 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 2e-34 | DOF zinc finger protein 1 |